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Sanay, R., Voulgaris, G. and Warner, J.C., 2007, Tidal asymmetry and residual circulation over linear sandbanks and their implication on sediment transport; A process-oriented numerical study: Journal of Geophysical Research, v. 112, C12015, doi:10.1029 /2007JC004101, 15 p. PDF

Warner, J.C., Geyer, W.R., and Lerczak, J.A., 2005, Numerical modeling of an estuary; A comprehensive skill assessment: Journal of Geophysical Research, v. 110, C05001, doi:10.1029/2004JC002691. Online

Harris, C.K., Gross, T., and Warner, J.C., in press, Sediment transport measurement and prediction [abs.]: U.S. Geological Survey Chesapeake Bay Conference, St. Michaels, Md., November 2001.

Warner, J.C., Sherwood, C.R., Butman, B., Arango, H.G., and Signell, R.P., in press, Implementation of a generic length scale turbulence closure in a 3D oceanographic model: Ocean Modeling.

Ganju, N.K., Schoellhamer, D.H., Warner, J.C., Barad, M.F. and Schladow, S.G., 2004, Tidal oscillation of sediment between a river and a bay; a conceptual mode: Journal of Estuarine, Coastal, and Shelf Science, v. 60, no. 1, p. 81-90.

Warner, J.C., Schoellhamer, D.H., Ruhl, C.A., and Burau, J.R., 2004, Floodtide pulses after low tides in shallow subembayments adjacent to deep channels: Journal of Estuarine, Coastal, and Shelf Science, v. 60, no. 2-June 2004, p. 213-228. http://www.sciencedirect.com/science/article/B6WDV-4C1FC02-1/2/b12becbd11f037389e37fc4bbd9e3480

Warner, J.C., Schoellhamer, D.H., and Schladow, S.G., 2003, Tidal truncation and barotropic convergence in a channel network tidally driven from opposing entrances: Estuarine, Coastal, and Shelf Science, v. 56, no. 3-4, p. 629-639.

Warner, J.C., Schoellhamer, D.H., Burau, J.R., and Schladow, S.G., 2002, Effects of tidal current phase at the junction of two straits: Continental Shelf Research, 10th International Biennial Conference on Physics of Estuaries and Coastal Seas, Norfolk, Va., v. 22, p. 1629-1642.

Warner, J.C., Sherwood, C.R., Butman, B., Arango, H., and Signell, R.S., 2002, Turbulence closures for estuarine mixing; implementation and applications of a generic length scale method in the 3D oceanographic model ROMS [abs.]: Eos, Transactions, American Geophysical Union, Fall Meeting Supplement, Abstract # OS61A-0203, San Francisco, Calif., 6-10 December 2002, v. 83, no. 47, p. F694.

Barad, M.F., Schladow, S.G., Warner, J.C., and Schoellhamer, D.H., 2001, San Pablo Bay Coastal Intensive Site Network (CISNet) of environmental stress indicators; hydrodynamic database [abs.]: 5th Biennial State of the Estuary Conference, San Francisco, Calif., March 2001.

Schoellhamer, D.H., and Warner, J.C., 2001, A turbidity maximum and flood/ebb asymmetry of suspended sediment [abs.]: Proceedings of the 5th Biennial State of the Estuary Conference, San Francisco, Calif., 9-11 October 2001, p. 33. http://ca.water.usgs.gov/abstract/sfbay/abstractsec2001.html

Warner, J.C., Schoellhamer, D.H., Burau, J., and Schladow, S.G., 2000, Effects of tidal current phase at the junction of two straits [abs.]: American Geophysical Union, Fall Meeting, San Francisco, Calif., December 2000, v. 81, no. 43.

Warner, J.C., 2000, Barotropic and baroclinic convergence zones in tidal channels: Dissertation, Department of Civil and Environmental Engineering, University of California, Davis, Calif.

Warner, J.C., Schladow, S.G., Schoellhamer, D.H., and Burau, J.R., 1999, Napa/Sonoma Marsh Hydrodynamic and Water Quality Study [abs.]: 4th Biennial State of the Estuary Conference, San Francisco, Calif., March 1999.

Warner, J.C., Schladow, S.G., and Schoellhamer, D.H., 1999, Summary and analysis - hydrodynamic and water-quality data for the Napa/Sonoma Marsh Complex, final report.: Environmental Dynamics Research Laboratory Report Number 99-01, 85 p.

Warner, J.C., Schoellhamer, D.H., and Burau, J.R., 1997, A sediment transport pathway in the back of a nearly semi-enclosed subembayment of San Francisco Bay, California: Proceedings, XXVII IAHR Congress, American Society of Civil Engineers Water Resources Engineering Division, San Francisco, Calif., v. 2, p. 1096-1101.

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